Convert Electron Microscopy Data (HDF5) to arrow

Download and install the latest version of Filestar.
Right click on one or more Emd file(s) on your desktop and select Convert with Filestar.
Type convert to arrow in the search box.
Press Convert.
Or let an AI agent do it: filestarcli -i file.emd -c "convert to arrow" (how).

Let your AI agent convert Electron Microscopy Data (HDF5) to ARROW

Claude Code, Codex, Cursor and other agents can do this on your computer with Filestar. Your files stay on your machine.

Install Filestar and add it to your agents:

npm install -g filestar
filestarcli agent install

Or add it in one click:

Claude Code:

claude mcp add filestar -- npx -y [email protected] mcp

Then ask your agent:

“Convert the Electron Microscopy Data (HDF5) files in my Downloads folder to ARROW”

Or run it yourself:

filestarcli -i file.emd -c "convert to arrow"

Runs on your computer, so your files stay on it. Works on Windows, macOS and Linux. 50 free conversions with the npm install, no account needed.

Can my AI agent convert Electron Microscopy Data (HDF5) to ARROW?

Yes. Install the Filestar CLI with npm install -g filestar and your agent can run filestarcli -i file.emd -c "convert to arrow" on your computer, so your files stay on it.

Using Filestar With AI Agents → · Download SKILL.md

What is the difference between Electron Microscopy Data (HDF5) and .arrow?

Name: Electron Microscopy Data (HDF5); Apache Arrow IPC File
Extension: .emd; .arrow
Format: Binary; Binary
Category: Data; Data
Developer: Thermo Fisher Scientific; Berkeley NCEM; The Apache Software Foundation
Description: An .emd file from an electron microscope (Thermo Fisher Velox, Berkeley NCEM) whose bytes are an HDF5 container holding the acquired images, metadata and thumbnails.; An Arrow IPC file holds a data table in Apache Arrow's in-memory columnar layout, so it can be memory-mapped and read without conversion. Feather version 2 files are the same format.
MIME Type: application/x-hdf5; application/vnd.apache.arrow.file
Sample: sample.arrow
Wikipedia: .emd on Wikipedia; .arrow on Wikipedia

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